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Publications



  1. Rational Design of Peptide Biorecognition Elements on Carbon Nanotubes for Sensing Volatile Organic Compounds. Advanced Materials Interfaces 2022
  2. Molecular dynamics simulations explore effects of electric field orientations on spike proteins of SARS‑CoV‑2 virions. Scientific Reports 12:12986 2022
  3. Supplementary Information: Molecular dynamics simulations explore effects of electric field orientations on spike proteins of SARS‑CoV‑2 virions. Scientific Reports 12:12986 2022
  4. Creation of stable water-free antibody based protein liquids. COMMUNICATIONS MATERIALS 2021, 2, 118.
  5. Gamma estimator of Jarzynski equality for recovering binding energies from noisy dynamic data sets. Nature Communications 2020, 11, 5517.

    6. Sensing

  6. In-Silico Discovery and Validation of Neuropeptide Y Binding Peptides for Sensors. J. Phys. Chem. B 2020, 124(1), 61–68.
  7. Advancing Peptide-Based Biorecognition Elements for Biosensors Using In-Silico Evolution. ACS Sensors. 2018, 3(5), 1024–1031.
  8. Peptide Functionalized Gold Nanorods for the Sensitive Detection of a Cardiac Biomarker Using Plasmonic Paper Devices. Nature/Scientific Reports 2015, 5, 16206.
  9. Biomimetic Chemosensor: Designing Peptide Recognition Elements for Surface Functionalization of Carbon Nanotube Field Effect Transistors. ACS Nano 2010, 4 (1), 452-458.

    10. Peptide-surface

  10. Peptide Interactions with Zigzag Edges in Graphene. Biointerphases 2016, 11, 041003.
  11. Optical Modulation of Azobenzene-Modified Peptide for Gold Surface Binding. ChemPhysChem 2016, 17(20), 3252-3259.
  12. Electronic Properties of a Graphene Device with Peptide Adsorption: Insight from Simulation. ACS Applied Materials & Interfaces 2013, 5 (15), 7470-7477.
  13. Biotic-Abiotic Interactions: Factors that Influence Peptide-Graphene Interactions. ACS Applied Materials & Interfaces 2015, 7(36), 20447–20453.
  14. Structure of a Peptide Adsorbed on Graphene and Graphite. Nano Letters 2012, 12 (5), 2342-2346.
  15. Preferential Binding of Peptides to Graphene Edges and Planes. Journal of the American Chemical Society 2011, 133 (37)

    16. Coarse-Grained Monte Carlo

  16. Binding of Solvated Peptide (EPLQLKM) with a Graphene Sheet via Simulated Coarse-Grained Approach. J. Chem. Phys. 2014, 140, 204901.
  17. A Hierarchical Coarse-Grained (All-Atom-to-All-Residue) Computer Simulation Approach: Self-Assembly of Peptides. PLOS ONE 2013, 8 (8), e70847.
  18. Stability of Peptide (P1 and P2) Binding to a Graphene Sheet via an All-Atom to All-Residue Coarse-Grained Approach. Soft Matter 2012, 8 (35), 9101-9109.

    19. DNA-surface

  19. Enrichment of (6,5) Single Wall Carbon Nanotubes Using Genomic DNA. Nano Letter 2008, 8 (12), 4415-4420.
  20. The Effect of Single Wall Carbon Nanotube Metallicity on Genomic DNA-Mediated Chirality Enrichment. Nanoscale 2013, 5 (11), 4931-4936.

    21. Polymers

  21. Poly (2-hydroxyethyl methacrylate) for Enzyme Immobilization: Impact on Activity and Stability of Horseradish Peroxidase. Biomacromolecules 2011, 12 (5), 1822-1830.

    22. Ion Channels

  22. Yin et al., Ion transit pathways and gating in ClC chloride channels. 10970134, 2004, 2,
  23. TransPath: A Computational Method for Locating Ion Transit Pathways through Membrane Proteins. Proteins 2008, 71 (3), 1349-1359.
  24. Proton Pathways and H+/Cl- Stoichiometry in Bacterial Chloride Transporters. Proteins 2007, 68 (1), 26-33.
  25. Comment on Ion Transit Pathways and Gating in ClC Chloride Channels. Proteins 2006, 62 (2), 553-554.
  26. Equilibrium Structure of Electrolyte Calculated Using Equilibrium Monte Carlo, Molecular Dynamics, and Boltzmann Transport Monte Carlo Simulations. Nanotech 2003, 3, 447-451.

    27. Neutron Transport Theory and Optimization Applications

  27. Theory and Analysis of the Feynman-Alpha Method for Deterministically and Randomly Pulsed Neutron Sources. Nuclear Science and Engineering 2004, 148(1), 67-78.
  28. A Unified Theory of Zero Power and Power Reactor Noise via Backward Master Equations. Annals of Nuclear Energy 2002, 29 (2), 169-192.
  29. Spectrum of the Transport Operator in a Nonuniform Slab with Generalized Boundary Conditions. Transport Theory and Statistical Physics 2002, 31 (3), 273-287.
  30. The Generalized Theory of Neutron Noise in a Random Medium. Proceedings of the Royal Society of London Series A: Mathematical Physical and Engineering Sciences 2002, 458 (2017), 233-253.
  31. A Class of Semi-Linear Evolution Equations Arising in Neutron Fluctuations. Transport Theory and Statistical Physics 2002, 31 (2), 141-151.
  32. Calculating Reactor Transfer Functions by Pade Approximation via Lanczos Algorithm. Annals of Nuclear Energy 2001, 28 (16), 1595-1611.
  33. Quantitative Analysis of the Feynman- and Rossi-Alpha Formulas with Multiple Emission Sources. Nuclear Science and Engineering 2000, 136 (2), 305-319.
  34. The General Backward Theory of Neutron Fluctuations in Subcritical Systems with Multiple Emission Sources. Nuovo Cimento Della Societa Italiana Di Fisica a-Nuclei Particles and Fields 1999, 112 (10), 1067-1092.
  35. 阳-朱解决的中子迁移算子谱理论中的一个公开问题. 应用泛函分析学报 2017, 19(1), 1-5.
  36. Optimization Applications in Molecular Recognition. 应用泛函分析学报 2011, 13 (3), 303-309.
  37. On the Neutron Flux Flattening Problem. Applicable Analysis 2001, 77 (1-2), 151-163.
  38. Optimal Control Applications in Transport Theory. Transport Theory and Statistical Physics 1998, 27 (5), 691 – 700.
  39. Complex eigenvalues of a mono-energetic neutron transport operator. Transport Theory and Statistical Physics 1997, 26 (1), 253 - 261.
  40. On the index of the eigenvalue of a transport operator. Transport Theory and Statistical Physics 1995, 24 (9), 1411 - 1418.
  41. 边界条件与占优本征值.《数学物理学报》1994年 第04期.
  42. 几类算子列的关系.《工科数学》1994年S1期.
  43. Optimal control for a class of systems and its applications in the power factor optimization of the nuclear reactor. Lecture Notes in Control and Information Sciences 159: Control Theory of Distributed Parameter Systems and Applications, Springer Berlin / Heidelberg: 1991, 159, 162-170.